{"id":1407,"date":"2026-03-11T13:46:04","date_gmt":"2026-03-11T12:46:04","guid":{"rendered":"https:\/\/uniteid.fr\/?p=1407"},"modified":"2026-04-07T17:16:57","modified_gmt":"2026-04-07T15:16:57","slug":"evaluation-de-lapport-de-la-metagenomique-clinique","status":"publish","type":"post","link":"https:\/\/uniteid.fr\/en\/evaluation-de-lapport-de-la-metagenomique-clinique\/","title":{"rendered":"Evaluation of the contribution of clinical metagenomics using 3rd generation sequencing for the identification of emerging viruses"},"content":{"rendered":"<div style=\"height:40px\" aria-hidden=\"true\" class=\"wp-block-spacer\"><\/div>\n\n\n\n<ul class=\"wp-block-list\">\n<li class=\"has-medium-font-size\">Doctoral students: Mikail KELLECI (IHAP), Mortimer MEUNIER (INFINITy)<\/li>\n\n\n\n<li class=\"has-medium-font-size\">Directed by Jean-Luc GUERIN, Jacques IZOPET<\/li>\n\n\n\n<li class=\"has-medium-font-size\">Laboratories: Interactions H\u00f4tes Agents Pathog\u00e8nes - IHAP; Institut des Maladies Infectieuses et Inflammatoires - INFINITy<\/li>\n\n\n\n<li class=\"has-medium-font-size\">Dates: from December 1, 2025 to November 30, 2028; and from January 2, 2026 to December 31, 2028.\u00a0<\/li>\n<\/ul>\n\n\n\n<div style=\"height:40px\" aria-hidden=\"true\" class=\"wp-block-spacer\"><\/div>\n\n\n\n<p class=\"wp-block-paragraph\">Viral diseases represent a major health risk for both humans and animals. Rapid, robust identification and typing of viral agents is a scientific and medical priority, and calls for \u00abpipelines\u00bb that combine molecular biology technologies and bioinformatics algorithms to assemble, annotate and compare genomes. The METAVIRAL project aims to develop and evaluate a monitoring system based on clinical metagenomic protocols using 3rd generation sequencing technologies, from sample handling to biological validation of results. One thesis project (ENVT-IHAP laboratory) focuses specifically on the a priori-free identification of viruses in different matrices; the other thesis project (CHU-INFINITy laboratory) concerns the analysis of variants that escape vaccination or treatment.<\/p>\n\n\n\n<p class=\"wp-block-paragraph\"><\/p>","protected":false},"excerpt":{"rendered":"<p>Les maladies virales repr\u00e9sentent un risque sanitaire de premier plan, chez l\u2019homme et l\u2019animal. L\u2019identification et le typage rapide et robuste des agents viraux est une priorit\u00e9 scientifique et m\u00e9dicale et fait appel \u00e0 des \u00ab pipelines \u00bb qui associent technologies de biologie mol\u00e9culaire et algorithmes bioinformatiques pour assembler, annoter et comparer les g\u00e9nomes. Le [&hellip;]<\/p>\n","protected":false},"author":1,"featured_media":140,"comment_status":"closed","ping_status":"closed","sticky":false,"template":"","format":"standard","meta":{"_acf_changed":false,"footnotes":""},"categories":[20],"tags":[],"class_list":["post-1407","post","type-post","status-publish","format-standard","has-post-thumbnail","hentry","category-these"],"acf":[],"yoast_head":"<!-- This site is optimized with the Yoast SEO plugin v27.6 - https:\/\/yoast.com\/product\/yoast-seo-wordpress\/ -->\n<title>\u00c9valuation de l\u2019apport de la m\u00e9tag\u00e9nomique clinique par 3\u00e8me g\u00e9n\u00e9ration de s\u00e9quen\u00e7age pour l\u2019identification de virus \u00e9mergents - UNITEID Graduate school<\/title>\n<meta name=\"robots\" content=\"index, follow, max-snippet:-1, max-image-preview:large, max-video-preview:-1\" \/>\n<link rel=\"canonical\" href=\"https:\/\/uniteid.fr\/en\/evaluation-de-lapport-de-la-metagenomique-clinique\/\" \/>\n<meta property=\"og:locale\" content=\"en_US\" \/>\n<meta property=\"og:type\" content=\"article\" \/>\n<meta property=\"og:title\" content=\"\u00c9valuation de l\u2019apport de la m\u00e9tag\u00e9nomique clinique par 3\u00e8me g\u00e9n\u00e9ration de s\u00e9quen\u00e7age pour l\u2019identification de virus \u00e9mergents - UNITEID Graduate school\" \/>\n<meta property=\"og:description\" content=\"Les maladies virales repr\u00e9sentent un risque sanitaire de premier plan, chez l\u2019homme et l\u2019animal. L\u2019identification et le typage rapide et robuste des agents viraux est une priorit\u00e9 scientifique et m\u00e9dicale et fait appel \u00e0 des \u00ab pipelines \u00bb qui associent technologies de biologie mol\u00e9culaire et algorithmes bioinformatiques pour assembler, annoter et comparer les g\u00e9nomes. 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